Drosophila Genetic Resource Center
DGRC - Drosophila Stocks at Drosophila Genetic Resource Center -DGRC - Drosophila Genetic Resource Center, Kyoto Institute of Technology - KYOTO Stock CenterDGRC - Drosophila Genetic Resource Center, Kyoto Institute of Technology - KYOTO Stock Center
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  Branch 6: Young genes with mutant or insertion stocks

 

Branch Gene No. CG Number Gene Symbol Gene Full Name Chromosome Arm Expression Research Paper
6 1 CG7045 CG7045   3R Testis
Lebo et al., 2009, BMC Genomics 10: 80Somatic, germline and sex hierarchy regulated gene expression during Drosophila metamorphosis. [FBrf0207472]
Ragab et al., 2006, Genetics 172(2): 1069--1078High mobility group proteins HMGD and HMGZ interact genetically with the Brahma chromatin remodeling complex in Drosophila. [FBrf0190761]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
NIG-Fly 7045R-1 CG7045[NIG.7045R]
NIG-Fly 7045R-2 CG7045[NIG.7045R]
BDSC 28656 y[1] v[1]; P{y[+t7.7] v[+t1.8]=TRiP.JF03071}attP2
BDSC 29285 w[1118]; Mi{ET1}MB12252
VDRC v19809 w[1118]; P{GD4117}v19809/TM3
Exelixis at Harvard Medical School - PBac{WH}T-cp1f01007 T-cp1
6 2 CG32733 CR32733   X *
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Blanco et al., 2010, BMC Dev. Biol. 10: 94Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
6 3 CG10102 CR10102   2R 0
Kong et al., 2010, Alcoholism, Clin. Exp. Res. 34(2): 302--316Ethanol-regulated genes that contribute to ethanol sensitivity and rapid tolerance in Drosophila. [FBrf0209720]
Maines et al., 2007, Development 134(8): 1471--1479Stonewalling Drosophila stem cell differentiation by epigenetic controls. [FBrf0200664]
Mattaliano et al., 2007, Mol. Cell. Neurosci. 36(2): 211--221The Drosophila ARC homolog regulates behavioral responses to starvation. [FBrf0201275]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 142012 y[*] w[*]; P{ry[+t7.2]=neoFRT}40A P{w[+mW.hs]=FRT(w[hs])}G13 cn[1] PBac{SAstopDsRed}LL07295 bw[1] / CyO, S[*] bw[1]
Kyoto DGRC 203803 y[1] w[67c23]; P{w[+mC]=GSV6}GS12073/SM1
BDSC 12770 w[1118]; P{w[+mGT]=GT1}BG01371 Arc1
BDSC 20918 y[1] w[67c23]; P{w[+mC] y[+mDint2]=EPgy2}CR10102[EY14313]
BDSC 22341 y[1] w[67c23]; P{w[+mC] y[+mDint2]=EPgy2}EY19868 Arc1
BDSC 26968 y[1] w[*]; P{w[+mC]=EP}CR10102[G19544]
Exelixis at Harvard Medical School - P{XP}d10376
Exelixis at Harvard Medical School - P{XP}d04039 Arc1
FBrf0184340 - CR10102[d04795]
6 4 CG6900 CR6900   X Salivary gland, Midgut, Tubule, Hindgut, Male accessory glands, Larval tubule, Larval fat body, S2 cells (growing)
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Buffin and Gho, 2010, PLoS ONE 5(2): e9285Laser microdissection of sensory organ precursor cells of Drosophila microchaetes. [FBrf0210039]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
VDRC v23601 w1118; P{GD13712}v23601
VDRC v23602 w1118; P{GD13712}v23602
VDRC v49628 w1118; P{GD17524}v49628
VDRC v49629 w1118; P{GD17524}v49629
Exelixis at Harvard Medical School - PBac{RB}CG6961e01669 CG6961
FBrf0208510 - CR6900[KK115999]
6 5 CG31668 CG31668   2L Tubule
Rogers and Hartl, 2012, Mol. Biol. Evol. 29(2): 517--529Chimeric Genes as a Source of Rapid Evolution in Drosophila melanogaster. [FBrf0217452]
Rogers et al., 2009, Genetics 181(1): 313--322Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster. [FBrf0207085]
Wang et al., 2004, Genome Biol. 5(9): R69Function-informed transcriptome analysis of Drosophila renal tubule. [FBrf0180324]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 25364 w[1118]; Mi{ET1}CG31668[MB08037]
VDRC v104093 P{KK103908}VIE-260B
VDRC v2548 w[1118]; P{GD823}v2548
Exelixis at Harvard Medical School - P{XP}d03922
6 6 CG6835 GS Glutathione Synthetase   X *
Tsuda et al., 2010, FEBS Lett. 584(15): 3398--3401Loss of Trx-2 enhances oxidative stress-dependent phenotypes in Drosophila. [FBrf0211377]
Lebo et al., 2009, BMC Genomics 10: 80Somatic, germline and sex hierarchy regulated gene expression during Drosophila metamorphosis. [FBrf0207472]
Ravi et al., 2009, PLoS Genet. 5(6): e1000527A network of conserved damage survival pathways revealed by a genomic RNAi screen. [FBrf0208272]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 11443 w[1118] P{w[+mC]=EP}GS[EP1322]
BDSC 21864 w[1118] P{w[+mC]=EPg}HP10272 CG6788
FBrf0208510 - GS[KK115968]
6 7 CG12324 RpS15Ab Ribosomal protein S15Ab   2R *
D?az-Castillo and Ranz, 2012, Mol. Biol. Evol. 29(9): 2105--2108Nuclear chromosome dynamics in the Drosophila male germ line contribute to the nonrandom genomic distribution of retrogenes. [FBrf0219274]
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Booker et al., 2011, BMC Genomics 12: 50False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969]
Zhang et al., 2011, Bioinformatics 27(13): 1749--1753A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. [FBrf0216536]
Daines, Wang, et. al. 2011, Genome Res. 21 315--324The Drosophila melanogaster transcriptome by paired-end RNA sequencing. [FBrf0213064][pmid.21177959][doi.10.1101/gr.107854.110]
Casad et al., 2011, Genetics 189(3): 861--870Cardiomyopathy Is Associated with Ribosomal Protein Gene Haplo-Insufficiency in Drosophila melanogaster. [FBrf0216591]
Bai, Casola, et. al. 2007, Genome Biol. 8 R11 Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila. [FBrf0192134][pmid.17233920][doi.10.1186/gb-2007-8-1-r11]
Marygold et al., 2007, Genome Biol. 8(10): R216 The ribosomal protein genes and Minute loci of Drosophila melanogaster. [FBrf0205398]
Cermelli, Guo, et. al. 2006 The lipid-droplet proteome reveals that droplets are a protein-storage depot. Curr. Biol. 16 1783--1795 paperBjorklund, Taipale, et. al. 2006 Identification of pathways regulating cell size and cell-cycle progression by RNAi. Nature 439 1009--1013 paperDai et al., 2006, Gene 385: 96--102 Retrogene movement within- and between-chromosomes in the evolution of Drosophila genomes. [FBrf0194437]
Lum, Yao, et. al. 2003 Identification of Hedgehog pathway components by RNAi in Drosophila cultured cells. Science 299 2039--2045 paperBetran, Thornton, et. al. 2002 Retroposed new genes out of the X in Drosophila. Genome Res. 12 1854--1859 paper
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 114434 y[d2] w[1118] P{ry[+t7.2]=ey-FLP.N}2; P{ry[+t7.2]=neoFRT}42D P{w[+mC] y[+mDint2]=EPgy2}CG12343[EY04947] /CyO y[+] CG12343
BDSC 16628 y[1] w[67c23]; P{w[+mC] y[+mDint2]=EPgy2}CG12343[EY04947]/CyO CG12343
BDSC 18995 w[1118]; PBac{w[+mC]=WH}Lsm10[f06616] Lsm10
BDSC 34008 y[1] sc[*] v[1]; P{y[+t7.7] v[+t1.8]=TRiP.HMS00973}attP2/TM3, Sb[1]
FBrf0159322 - RpS15Ab[dsRNA.cLa]
FBrf0208510 - RpS15Ab[KK115453]
6 8 CG31958 CG31958   2L *
Ni et al., 2008, Nat. Methods 5(1): 49--51Vector and parameters for targeted transgenic RNA interference in Drosophila melanogaster. [FBrf0200406]
Giot et al., 2003, Science 302(5651): 1727--1736A protein interaction map of Drosophila melanogaster. [FBrf0173233]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 14882 y[1] w[67c23]; P{y[+mDint2] w[BR.E.BR]=SUPor-P}KG01131 CG3921
BDSC 18504 w1118; PBac{WH}CG31960f02028/CyO CG31960
BDSC 31569 y[1] v[1]; P{y[+t7.7] v[+t1.8]=TRiP.JF01142}attP2
Exelixis at Harvard Medical School - PBac{PB}c01803 CG31960
Exelixis at Harvard Medical School - P{XP}d11144 CG3921
FBrf0208510 - CG31958[KK115663]
6 9 CG31953 CR31953   2L Midgut, Larval midgut, S2 cells (growing)
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 141406 y[*] w[*]; PBac{SAstopDsRed}LL04981 P{ry[+t7.2]=neoFRT}40A P{w[+mW.hs]=FRT(w[hs])}G13 cn[1] bw[1] / CyO, S[*] bw[1] Hydr2
FBrf0202579 - CR31953[GD10415]
FBrf0208510 - CR31953[KK115990]
6 10 CG30031 CG30031   2R *
Kelleher and Pennington, 2009, Mol. Biol. Evol. 26(9): 2125--2134Protease gene duplication and proteolytic activity in Drosophila female reproductive tracts. [FBrf0208688]
Misra et al., 2002, Genome Biol. 3(12): RESEARCH0083Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. [FBrf0155827]
6 11 CG31332 Unc-115b -   3R Brain, Head, Eye, Thoracicoabdominal ganglion, Salivary gland, Crop, Midgut, Tubule, Hindgut, Heart, Fat body, Male accessory glands, Virgin spermatheca, Mated spermatheca, Adult carcass, Larval CNS, Larval Salivary gland, Larval midgut, Larval tubule, Larval hindgut, Larval trachea, Larval carcass, S2 cells (growing)
Hartmann et al., 2011, RNA 17(3): 453--468Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster. [FBrf0212988]
Hansen et al., 2009, PLoS Genet. 5(6): e1000525Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. [FBrf0208149]
Davis, 2003, D. I. S. 86: 126--128The genes of the elbow-no-ocelli genetic complex in D. melanogaster. [FBrf0179566]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 115447 w[1118]; PBac{803.P.SVS-0}Unc-115b[CPTI003765]
Kyoto DGRC 200565 y[1] w[67c23]; P{w[+mC]=GSV1}GS3224/TM3, Sb[1] Ser[1] CG32939
Kyoto DGRC 203963 y[1]w[67c23];P{w[+mC]=GSV7}GS22390/TM3,Sb[1]Ser[1] CG32939
NIG-Fly 31332R-1 Unc-115b[NIG.31332R]
NIG-Fly 31332R-2 Unc-115b[NIG.31332R]
BDSC 37998 y[1] w[*]; Mi{y[+mDint2]=MIC}Unc-115b[MI04996]
FBrf0208510 - Unc-115b[KK115670]
6 12 CG31054 CR31054   3R *
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 30153 w[1118]; P{w[+mC]=EP}G5369
6 13 CG32671 Rab9Fa Rab at 9Fa   X *
Babenko et al., 2009, Dokl. Biochem. Biophys. 424: 27--30Characteristics of molecular-genetic organization of intercalary heterochromatin band 10A1-2 in X chromosome of Drosophila melanogaster. [FBrf0207731][19341102]
Hutter, 2007, Adv. Genet. 58: 1--23Rapidly evolving Rab GTPase paralogs and reproductive isolation in Drosophila. [FBrf0199126]
Zhang et al., 2007, Genetics 176(2): 1307--1322Thirty-one flavors of Drosophila Rab proteins. [FBrf0201049]
Thornton and Long, 2005, Mol. Biol. Evol. 22(2): 273--284Excess of Amino Acid Substitutions Relative to Polymorphism Between X-Linked Duplications in Drosophila melanogaster. [FBrf0180520]
Hutter, 2002, Dev. Genes Evol. 212(10): 504--512X-linked small GTPase and OXPHOS genes are candidates for the genetic basis of hybrid inviability in Drosophila. [FBrf0151909]
Pereira-Leal and Seabra, 2001, J. Mol. Biol. 313(4): 889--901Evolution of the Rab family of small GTP-binding proteins. [FBrf0141628]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
FBrf0208510 - Rab9Fa[KK116172]
6 14 CG33105 p24-2 p24-related-2   3R Salivary gland, Midgut, Male accessory glands, Adult carcass, Larval Salivary gland, Larval midgut, Larval tubule, Larval hindgut, Larval fat body, S2 cells (growing)
Saleem et al., 2012, Mech. Dev. 129(5-8): 177--191Drosophila melanogaster p24 trafficking proteins have vital roles in development and reproduction. [FBrf0219054]
Ou et al., 2011, PLoS Biol. 9(9): e1001160Nuclear Receptor DHR4 Controls the Timing of Steroid Hormone Pulses During Drosophila Development. [FBrf0216318]
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Port et al., 2011, EMBO Rep. 12(11): 1144--1152A genome-wide RNA interference screen uncovers two p24 proteins as regulators of Wingless secretion. [FBrf0216532]
Daines, Wang, et. al. 2011, Genome Res. 21 315--324The Drosophila melanogaster transcriptome by paired-end RNA sequencing. [FBrf0213064][pmid.21177959][doi.10.1101/gr.107854.110]
Fox, Hanlon, et. al. 2010 The CrebA/Creb3-like transcription factors are major and direct regulators of secretory capacity. J. Cell Biol. 191 479--492 paperFern?ndez-Ayala, Chen, et. al. 2010 Gene expression in a Drosophila model of mitochondrial disease. PLoS ONE 5 e8549 paperChen et al., 2010, Science 330(6011): 1682--1685 New genes in Drosophila quickly become essential. [FBrf0212650]
Vinci, Xia, et. al. 2008 Preservation of genes involved in sterol metabolism in cholesterol auxotrophs: facts and hypotheses. PLoS ONE 3 e2883 paper1Boltz, Ellis, et. al. 2007 Drosophila melanogaster p24 genes have developmental, tissue-specific, and sex-specific expression patterns and functions. Dev. Dyn. 236 544--555 paperAbrams and Andrew 2005 CrebA regulates secretory activity in the Drosophila salivary gland and epidermis. Development 132 2743--2758 paper
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 141175 y[*] w[*]; P{w[+mW.hs]=FRT(w[hs])}2A P{ry[+t7.2]=neoFRT}82B PBac{SAstopDsRed}LL04082 P{y[+t7.7] ry[+t7.2]=Car20y}96E / TM6B, Tb[1]
FBrf0204101 - p24-2[DG16306]
FBrf0208510 - p24-2[KK116027]
FBrf0217540 - p24-2[MI04996]
6 15 CG32165 CG32165   3L *
Chan et al., 2011, Hum. Mol. Genet. 20(9): 1738--1750Expanded polyglutamine domain possesses nuclear export activity which modulates subcellular localization and toxicity of polyQ disease protein via exportin-1. [FBrf0214367]
McKeown et al., 1987, Cell 48: 489--499A molecular analysis of transformer, a gene in Drosophila melanogaster that controls female sexual differentiation. [FBrf0045766]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 142075 y[*] w[*]; PBac{SAstopDsRed}LL07544 P{w[+mW.hs]=FRT(w[hs])}2A P{ry[+t7.2]=neoFRT}82B P{y[+t7.7] ry[+t7.2]=Car20y}96E / TM6B, Tb[1]
Kyoto DGRC 206874 y[1] w[67c23]; P{w[+mC]=GSV6}GS17023/TM3, Sb[1] Ser[1]
BDSC 19365 w*; PBac{GAL4D,EYFP}CG32165PL00043 P{FRT(whs)}2A P{neoFRT}82B
BDSC 21104 y[1] w[67c23]; P{w[+mC] y[+mDint2]=EPgy2}EY14634 spd-2
FBrf0208510 - CG32165[KK115697]
6 16 CG31292 CR31292   3R *
Burmester et al., 2006, FEBS J. 273(3): 468--480The hemoglobin genes of Drosophila. [FBrf0190459]
6 17 CG33470 CG33470   2R Head, Eye, Crop, Hindgut, Heart, Fat body, Virgin spermatheca, Mated spermatheca, Adult carcass
Rynes et al., 2012, Mol. Cell. Biol. 32(19): 3949--3962Activating transcription factor 3 regulates immune and metabolic homeostasis. [FBrf0219385]
Yandell et al., 2005, Proc. Natl. Acad. Sci. U.S.A. 102(5): 1566--1571A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome. [FBrf0183655]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 28540 y[1] v[1]; P{y[+t7.7] v[+t1.8]=TRiP.HM05026}attP2
6 18 CG32783 CG32783   X *
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Exelixis at Harvard Medical School - PBac{RB}e01653 Vap-33-1
FBrf0208510 - CG32783[KK115113]
6 19 CG32788 Crg-1 Circadianly Regulated Gene   X Fat body, Mated spermatheca
Daines, Wang, et. al. 2011, Genome Res. 21 315--324The Drosophila melanogaster transcriptome by paired-end RNA sequencing. [FBrf0213064][pmid.21177959][doi.10.1101/gr.107854.110]
Hogan and Bettencourt, 2009, J. Mol. Evol. 68(4): 337--350Duplicate gene evolution toward multiple fates at the Drosophila melanogaster HIP/HIP-Replacement locus. [FBrf0207702]
Gilfillan et al., 2006, Genes Dev. 20(7): 858--870Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. [FBrf0190543]
Rouyer, Rachidi, et. al. 1997, EMBO J. 16 3944--3954A new gene encoding a putative transcription factor regulated by the Drosophila circadian clock. [FBrf0096204][9233804]
So and Rosbash 1997, EMBO J. 16 7146--7155Post-transcriptional regulation contributes to Drosophila clock gene mRNA cycling. [FBrf0099738][9384591]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 207010 y[1]w[67c23]P{w[+mC]=GSV2}GS50440/C(1)DX,y[1]f[1] CR33221
BDSC 13387 C(1;Y)1, y[1] P{y[+mDint2] w[BR.E.BR]=SUPor-P}Crg-1[KG00217]
BDSC 14724 y[1] P{y[+mDint2] w[BR.E.BR]=SUPor-P}Crg-1[KG08417]
BDSC 15742 y[1] w[67c23] P{w[+mC] y[+mDint2]=EPgy2}Crg-1[EY04367]
VDRC v46971 w[1118]; P{GD17265}v46971
VDRC v46972 w[1118]; P{GD17265}v46972/TM3
FBrf0202955 - Crg-1[d07272]
6 20 CG18789 CG18789   2L *
White et al., 2011, J. Cell Biol. 193(4): 677--694Drosophila histone locus bodies form by hierarchical recruitment of components. [FBrf0213662]
Rogers et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(24): 10943--10948Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster. [FBrf0211052]
Akdemir et al., 2007, Oncogene 26(36): 5184--5193p53 directs focused genomic responses in Drosophila. [FBrf0202061]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
NIG-Fly 18789R-1 CG18789[NIG.18789R]
NIG-Fly 18789R-2 CG18789[NIG.18789R]
BDSC 29683 y[1] w[*]; P{w[+mC]=EP}CG18789[G2513]
6 21 CG11659 CG11659   3R *
Fern?ndez-Ayala et al., 2010, PLoS ONE 5(1): e8549Gene expression in a Drosophila model of mitochondrial disease. [FBrf0209705]
King-Jones et al., 2006, Cell Metab. 4(1): 37--48The DHR96 nuclear receptor regulates xenobiotic responses in Drosophila. [FBrf0194449]
Zinke et al., 2002, EMBO J. 21(22): 6162--6173Nutrient control of gene expression in Drosophila: microarray analysis of starvation and sugar-dependent response. [FBrf0151960]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
FBrf0208510 - CG11659[KK116114]
6 22 CG11386 CR11386   X *
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Marygold et al., 2007, Genome Biol. 8(10): R216The ribosomal protein genes and Minute loci of Drosophila melanogaster. [FBrf0205398]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 19069 w[1118] PBac{w[+mC]=WH}CR11386[f07325a]
Exelixis at Harvard Medical School - PBac{WH}CR11386[f07325a]
6 23 CG30382 CG30382   2R Heart, Fat body, Ovary, Larval Salivary gland, Larval tubule, S2 cells (growing)
Yano et al., 2012, J. Neurogenet. 26(1): 53--63Identification of proteasome components required for apical localization of chaoptin using functional genomics. [FBrf0217843]
Booker et al., 2011, BMC Genomics 12: 50False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969]
Neum?ller et al., 2011, Cell Stem Cell 8(5): 580--593Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621]
Ravi et al., 2009, PLoS Genet. 5(6): e1000527A network of conserved damage survival pathways revealed by a genomic RNAi screen. [FBrf0208272]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 142147 y[*] w[*]; P{ry[+t7.2]=neoFRT}40A P{w[+mW.hs]=FRT(w[hs])}G13 cn[1] PBac{SAstopDsRed}LL07851 bw[1] / CyO, S[*] bw[1]
NIG-Fly 30382R-1 CG30382[NIG.30382R]
NIG-Fly 30382R-3 CG30382[NIG.30382R]
BDSC 13683 y[1] w[67c23]; P{y[+mDint2] w[BR.E.BR]=SUPor-P}KG00610 CG12822, CG12821
BDSC 27557 y[1] v[1]; P{y[+t7.7] v[+t1.8]=TRiP.JF02711}attP2
6 24 CG18853 CG18853   2R Brain, Thoracicoabdominal ganglion, Crop, Tubule, Ovary, Larval CNS, Larval trachea, S2 cells (growing)
Rogers and Hartl, 2012, Mol. Biol. Evol. 29(2): 517--529Chimeric Genes as a Source of Rapid Evolution in Drosophila melanogaster. [FBrf0217452]
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Blanco et al., 2010, BMC Dev. Biol. 10: 94Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Rogers et al., 2009, Genetics 181(1): 313--322Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster. [FBrf0207085]
Zraly et al., 2006, J. Biol. Chem. 281(46): 35305--35315Hormone-response genes are direct in vivo regulatory targets of Brahma (SWI/SNF) complex function. [FBrf0192654]
Kristensen et al., 2005, Genetics 171(1): 157--167Genome-wide analysis on inbreeding effects on gene expression in Drosophila melanogaster. [FBrf0187643]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 20203 y[1] w[67c23]; P{w[+mC] y[+mDint2]=EPgy2}CG18853[EY10700]
6 25 CG13402 βNACtes1   X Testis, Virgin spermatheca
Olenkina et al., 2012, Gene 499(1): 143--153Promoter contribution to the testis-specific expression of Stellate gene family in Drosophila melanogaster. [FBrf0218043]
Usakin et al., 2005, Mol. Biol. Evol. 22(7): 1555--1560An alien promoter capture as a primary step of the evolution of testes-expressed repeats in the Drosophila melanogaster genome. [FBrf0188092]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
VDRC v30051 w[1118]; P{GD15100}v30051
VDRC v30052 w[1118]; P{GD15100}v30052
FBrf0208510 - βNACtes1[KK115633]
6 26 CG32823 Sdic3 Sperm-specific dynein intermediate chain 3   X Testis
Yeh et al., 2012, Proc. Natl. Acad. Sci. U.S.A. 109(6): 2043--2048Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition. [FBrf0217456]
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Ponce, 2009, Genetica 135(3): 415--418The recent origin of the Sdic gene cluster in the melanogaster subgroup. [FBrf0207238]
Ponce, 2007, Genetica 131(3): 315--324The use of a non-LTR element to date the formation of the Sdic gene cluster. [FBrf0201563]
Ponce and Hartl, 2006, Gene 376(2): 174--183The evolution of the novel Sdic gene cluster in Drosophila melanogaster. [FBrf0195004]
Nurminsky et al., 1998, Nature 396(6711): 572--575Selective sweep of a newly evolved sperm-specific gene in Drosophila. [FBrf0105897]
6 27 CG32821 CR32821   X Tubule, Testis
Blanco et al., 2010, BMC Dev. Biol. 10: 94Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Bergman et al., 2006, Genome Biol. 7(11): R112Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. [FBrf0193410]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 106464 P{ry[+t7.2]=neoFRT}19A; ry[506]
FBrf0208510 - CR32821[KK116236]
6 28 CG33498 CG33498   X -
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Ponce and Hartl, 2006, Gene 376(2): 174--183The evolution of the novel Sdic gene cluster in Drosophila melanogaster. [FBrf0195004]
6 29 CG33497 Sdic2 Sperm-specific dynein intermediate chain 2   X -
Yeh et al., 2012, Proc. Natl. Acad. Sci. U.S.A. 109(6): 2043--2048Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition. [FBrf0217456]
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Ponce, 2009, Genetica 135(3): 415--418The recent origin of the Sdic gene cluster in the melanogaster subgroup. [FBrf0207238]
Ponce, 2007, Genetica 131(3): 315--324The use of a non-LTR element to date the formation of the Sdic gene cluster. [FBrf0201563]
Ponce and Hartl, 2006, Gene 376(2): 174--183The evolution of the novel Sdic gene cluster in Drosophila melanogaster. [FBrf0195004]
Nurminsky et al., 1998, Nature 396(6711): 572--575Selective sweep of a newly evolved sperm-specific gene in Drosophila. [FBrf0105897]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
FBrf0212197 - Sdic2[MI01210]
6 30 CG33666 CG33666   X -
Zhou et al., 2008, Genome Res. 18(9): 1446--1455On the origin of new genes in Drosophila. [FBrf0206967]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
FBrf0208510 - CG33666[KK116002]
6 31 CG33496 CG33496   X -
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Ponce and Hartl, 2006, Gene 376(2): 174--183The evolution of the novel Sdic gene cluster in Drosophila melanogaster. [FBrf0195004]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
FBrf0208510 - CG33496[KK115720]
6 32 CG33491 CG33491   X -
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Ponce and Hartl, 2006, Gene 376(2): 174--183The evolution of the novel Sdic gene cluster in Drosophila melanogaster. [FBrf0195004]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
VDRC "http://stockcenter.vdrc.at/control/product/~VIEW_INDEX=0/~VIEW_SIZE=100/~product_id=-" target="_blank"> - CG33491[KK115716]
6 33 CG33487 CG33487   X -
Ponce and Hartl, 2006, Gene 376(2): 174--183The evolution of the novel Sdic gene cluster in Drosophila melanogaster. [FBrf0195004]
6 34 CG32318 CG32318   3L -
Rogers and Hartl, 2012, Mol. Biol. Evol. 29(2): 517--529Chimeric Genes as a Source of Rapid Evolution in Drosophila melanogaster. [FBrf0217452]
Rogers et al., 2009, Genetics 181(1): 313--322Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster. [FBrf0207085]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 206228 y[1] w[67c23]; P{w[+mC]=GSV6}GS15475/TM6, Sb Tb Klp61F
BDSC 17506 y[1] w[67c23]; P{w[+mC] y[+mDint2]=EPgy2}EY08908/TM3, Sb[1] Ser[1]
6 35 CG12592 CG12592   3R Ovary, Testis, Larval CNS, S2 cells (growing)
Rogers and Hartl, 2012, Mol. Biol. Evol. 29(2): 517--529Chimeric Genes as a Source of Rapid Evolution in Drosophila melanogaster. [FBrf0217452]
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Rogers et al., 2009, Genetics 181(1): 313--322Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster. [FBrf0207085]
Lawniczak and Begun, 2004, Genome 47(5): 900--910A genome-wide analysis of courting and mating responses in Drosophila melanogaster females. [FBrf0180322]
Asha et al., 2003, Genetics 163(1): 203--215Analysis of ras-induced overproliferation in Drosophila hemocytes. [FBrf0155813]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 36079 y[1] sc[*] v[1]; P{y[+t7.7] v[+t1.8]=TRiP.GL00498}attP2
FBrf0208510 - CG12592[KK116135]
6 36 CG32797 CG32797   X Eye, Salivary gland, Tubule, Testis
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Blanco et al., 2010, BMC Dev. Biol. 10: 94Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
FBrf0208510 - CG32797[KK115792]
6 37 CG33247 Ste:CG33247 Ste:CG33247   X *
Olenkina et al., 2012, Gene 499(1): 143--153Promoter contribution to the testis-specific expression of Stellate gene family in Drosophila melanogaster. [FBrf0218043]
Weber et al., 2012, PLoS ONE 7(4): e34745Genome-Wide Association Analysis of Oxidative Stress Resistance in Drosophila melanogaster. [FBrf0218073]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
FBrf0208510 - Ste:CG33247[KK116026]
6 38 CG32580 Muc14A Mucin 14A   X Midgut, Testis, Male accessory glands, Larval midgut, S2 cells (growing)
Laflamme et al., 2012, J. Cell Biol. 198(1): 57--67Evi5 promotes collective cell migration through its Rab-GAP activity. [FBrf0218839]
Syed et al., 2008, PLoS ONE 3(8): e3041A potential role for Drosophila mucins in development and physiology. [FBrf0205867]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 18308 w[1118] PBac{w[+mC]=WH}Muc14A[f00286]
BDSC 23856 w[1118] Mi{ET1}CG12698[MB03675] CG12698
VDRC v105591 P{KK105893}VIE-260B
Exelixis at Harvard Medical School - PBac{WH}Muc14A[f00286]
Exelixis at Harvard Medical School - PBac{WH}Muc14A[f02698]
FBrf0212197 - Muc14A[MI01405]
6 39 CG33236 Ste:CG33236 Ste:CG33236   X *
Olenkina et al., 2012, Gene 499(1): 143--153Promoter contribution to the testis-specific expression of Stellate gene family in Drosophila melanogaster. [FBrf0218043]
Blanco et al., 2010, BMC Dev. Biol. 10: 94Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 205033 y[1] w[67c23] P{w[+mC]=GSV1}GS1195/Binsinscy CG33237
6 40 CG9580 Sdic1 Sperm-specific dynein intermediate chain 1   X Testis
Yeh et al., 2012, Proc. Natl. Acad. Sci. U.S.A. 109(6): 2043--2048Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition. [FBrf0217456]
Ragab et al., 2011, EMBO J. 30(6): 1123--1136Drosophila Ras/MAPK signalling regulates innate immune responses in immune and intestinal stem cells. [FBrf0213275]
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Ponce, 2009, Genetica 135(3): 415--418The recent origin of the Sdic gene cluster in the melanogaster subgroup. [FBrf0207238]
Ponce, 2007, Genetica 131(3): 315--324The use of a non-LTR element to date the formation of the Sdic gene cluster. [FBrf0201563]
Ponce and Hartl, 2006, Gene 376(2): 174--183The evolution of the novel Sdic gene cluster in Drosophila melanogaster. [FBrf0195004]
Nurminsky et al., 1998, Nature 396(6711): 572--575Selective sweep of a newly evolved sperm-specific gene in Drosophila. [FBrf0105897]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 32743 y[1] w[*] Mi{y[+mDint2]=MIC}Sdic1[MI01210]l
VDRC v103054 P{KK112037}VIE-260B
6 41 CG31904 CG31904   2L *
Rogers and Hartl, 2012, Mol. Biol. Evol. 29(2): 517--529Chimeric Genes as a Source of Rapid Evolution in Drosophila melanogaster. [FBrf0217452]
Rogers et al., 2009, Genetics 181(1): 313--322Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster. [FBrf0207085]
Miller et al., 2008, Insect Biochem. Mol. Biol. 38(10): 923--931The invertebrate B(0) system transporter, D. melanogaster NAT1, has unique d-amino acid affinity and mediates gut and brain functions. [FBrf0206657]
Romero-Calderon et al., 2007, Dev. Neurobiol. 67(5): 550--569A screen for neurotransmitter transporters expressed in the visual system of Drosophila melanogaster identifies three novel genes. [FBrf0200993]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
NIG-Fly 31904R-2 CG31904[NIG.31904R]
NIG-Fly 31904R-3 CG31904[NIG.31904R]
BDSC 13377 y[1] w[67c23]; P{y[+mDint2] w[BR.E.BR]=SUPor-P}KG00064
BDSC 34677 y[1] sc[*] v[1]; P{y[+t7.7] v[+t1.8]=TRiP.HMS01155}attP2
6 42 CG33237 Ste:CG33237 Ste:CG33237   X *
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 205033 y[1] w[67c23] P{w[+mC]=GSV1}GS1195/Binsinscy
FBrf0208510 - Ste:CG33237[KK115593]
FBrf0208510 - Ste:CG33237[KK115594]
6 43 CG31131 CG31131   3R *
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
NIG-Fly 31131R-2 CG31131[NIG.31131R]
NIG-Fly 31131R-3 CG31131[NIG.31131R]
6 44 CG33238 Ste:CG33238 Ste:CG33238   X *
6 45 CG33239 Ste:CG33239 Ste:CG33239   X *
6 46 CG9123 CG9123   X *
Svetec et al., 2009, Mol. Biol. Evol. 26(7): 1549--1556Recent strong positive selection on Drosophila melanogaster HDAC6, a gene encoding a stress surveillance factor, as revealed by population genomic analysis. [FBrf0208253]
Thornton and Long, 2005, Mol. Biol. Evol. 22(2): 273--284Excess of Amino Acid Substitutions Relative to Polymorphism Between X-Linked Duplications in Drosophila melanogaster. [FBrf0180520]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
NIG-Fly 9123R-2 CG9123[NIG.9123R]
NIG-Fly 9123R-3 CG9123[NIG.9123R]
VDRC v24629 w[1118]; P{GD7775}v24629
FBrf0202579 - CG9123[GD14126]
6 47 CG4575 CR4575   X *
Dai et al., 2006, Gene 385: 96--102Retrogene movement within- and between-chromosomes in the evolution of Drosophila genomes. [FBrf0194437]
Hoskins et al., 2005, Nucleic Acids Res. 33(21): e185Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP). [FBrf0191341]
Egger et al., 2002, Development 129(14): 3295--3309Gliogenesis in Drosophila: genome-wide analysis of downstream genes of glial cells missing in the embryonic nervous system. [FBrf0151258]
Fassler et al., 2002, Genome Res. 12(8): 1190--1200B-ZIP proteins encoded by the Drosophila genome: evaluation of potential dimerization partners. [FBrf0152056]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
FBrf0208864 - CR4575[JF03409]
6 48 CG33222 CR33222   X -
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Marygold et al., 2007, Genome Biol. 8(10): R216The ribosomal protein genes and Minute loci of Drosophila melanogaster. [FBrf0205398]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 33566 w[*] P{w[+mC]=EP}CR33222[G1898]
FBrf0208510 - CR33222[KK116171]
6 49 CG18166 CR18166   X *
Baeg et al., 2005, Genes Dev. 19(16): 1861--1870Genome-wide RNAi analysis of JAK/STAT signaling components in Drosophila. [FBrf0187589]
Yeramian and Jones, 2003, Nucleic Acids Res. 31(13): 3843--3849GeneFizz: a web tool to compare genetic (coding/non-coding) and physical (helix/coil) segmentations of DNA sequences. Gene discovery and evolutionary perspectives. [FBrf0161576]
Benos et al., 2001, Genome Res. 11(5): 710--730From First Base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. [FBrf0135823]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
FBrf0208510 - CR18166[KK116055]
6 50 CG32584 CG42299   X *
Betran et al., 2006, Mol. Biol. Evol. 23(11): 2191--2202Fast protein evolution and germ line expression of a Drosophila parental gene and its young retroposed paralog. [FBrf0192808]
Thornton and Long, 2005, Mol. Biol. Evol. 22(2): 273--284Excess of Amino Acid Substitutions Relative to Polymorphism Between X-Linked Duplications in Drosophila melanogaster. [FBrf0180520]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
NIG-Fly 15644R-2 CG42299[NIG.15644R]
NIG-Fly 15644R-3 CG42299[NIG.15644R]
VDRC v41586 w[1118]; P{GD9080}v41586
VDRC v41587 w[1118]; P{GD9080}v41587
VDRC v48386 w[1118]; P{GD15913}v48386
VDRC v48387 w[1118]; P{GD15913}v48387/CyO
6 51 CG32588 CG32588   X Testis
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
VDRC v102410 P{KK111592}VIE-260
VDRC v46656 w[1118]; P{GD15914}v46656/CyO
VDRC v46657 w[1118]; P{GD15914}v46657
6 52 CG11023 CG11023   2L Testis
Berdnik et al., 2012, J. Neurosci. 32(24): 8331--8340The SUMO Protease Verloren Regulates Dendrite and Axon Targeting in Olfactory Projection Neurons. [FBrf0218602]
Grzeschik et al., 2007, Dev. Biol. 311(1): 106--123Abnormalities in cell proliferation and apico-basal cell polarity are separable in Drosophila lgl mutant clones in the developing eye. [FBrf0200442]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Exelixis at Harvard Medical School - PBac{WH}f02732
6 53 CG18217 CR18217   3L -
Rogers and Hartl, 2012, Mol. Biol. Evol. 29(2): 517--529Chimeric Genes as a Source of Rapid Evolution in Drosophila melanogaster. [FBrf0217452]
Rogers et al., 2009, Genetics 181(1): 313--322Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster. [FBrf0207085]
McKeown et al., 1987, Cell 48: 489--499A molecular analysis of transformer, a gene in Drosophila melanogaster that controls female sexual differentiation. [FBrf0045766]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 126076 w[1118]; P{RS5}CR18217[5-SZ-3464]
Kyoto DGRC 141186 y[*] w[*]; PBac{SAstopDsRed}LL04152 P{w[+mW.hs]=FRT(w[hs])}2A P{ry[+t7.2]=neoFRT}82B P{y[+t7.7] ry[+t7.2]=Car20y}96E / TM6B, Tb[1]
Kyoto DGRC 201686 y[1] w[67c23]; P{w[+mC]=GSV6}GS9313 / TM3, Sb[1] Ser[1] CG32164
Kyoto DGRC 204871 y[1]w[67c23];P{w[+mC]=GSV2}GS50170/TM3,Sb[1]Ser[1] CG32164
NIG-Fly 18217R-1 CR18217[NIG.18217R]
NIG-Fly 18217R-3 CR18217[NIG.18217R]
BDSC 16757 y[1] w[67c23]; P{w[+mC] y[+mDint2]=EPgy2}EY06781 CG32164
BDSC 17108 w[1118]; P{w[+mC]=EP}CG32164[EP3291] CG32164
BDSC 27231 y[1] w[*]; P{w[+mC]=EP}CR18217[G8401]
VDRC v41665 w[1118]; P{GD9532}v41665/CyO
FBrf0104946 - P{EP}CR18217[EP3543]
FBrf0208510 - CR18217[KK116258]
6 54 CG4478 Mst35Bb Male-specific-transcript-35Bb   2L Testis
Droge-Young et al., 2012, J. Evol. Biol. 25(8): 1555--1563Covariance among premating, post-copulatory and viability fitness components in Drosophila melanogaster and their influence on paternity measurement. [FBrf0218900]
Kanippayoor and Moehring, 2012, Int. J. Evol. Biol. 2012: 947381Allelic Expression of Drosophila Protamines during Spermatogenesis. [FBrf0218218]
K?ttgen et al., 2011, PLoS ONE 6(5): e20031Drosophila Sperm Swim Backwards in the Female Reproductive Tract and Are Activated via TRPP2 Ion Channels. [FBrf0213786]
Schnakenberg et al., 2011, PLoS Biol. 9(11): e1001192Sperm-storage defects and live birth in Drosophila females lacking spermathecal secretory cells. [FBrf0216767]
Mikhaylova and Nurminsky, 2011, BMC Biol. 9: 29Lack of global meiotic sex chromosome inactivation, and paucity of tissue-specific gene expression on the Drosophila X chromosome. [FBrf0213839]
Sartain et al., 2011, Development 138(8): 1619--1629The poly(A) polymerase GLD2 is required for spermatogenesis in Drosophila melanogaster. [FBrf0213334]
Yang and Lu, 2011, Biol. Reprod. 84(5): 1005--1015Drosophila sperm motility in the reproductive tract. [FBrf0214387]
Yang et al., 2011, Mol. Biol. Cell 22(7): 976--987Regulation of flagellar motility by the conserved flagellar protein CG34110/Ccdc135/FAP50. [FBrf0214073]
Manier, Belote, et. al. 2010 Resolving mechanisms of competitive fertilization success in Drosophila melanogaster. Science 328 354--357 paperRathke, Barckmann, et. al. 2010 Distinct functions of Mst77F and protamines in nuclear shaping and chromatin condensation during Drosophila spermiogenesis. Europ. J. Cell Biol. 89 326--338 paperAwe and Renkawitz-Pohl 2010 Histone H4 Acetylation is Essential to Proceed from a Histone- to a Protamine-based Chromatin Structure in Spermatid Nuclei of Drosophila melanogaster. Syst. Biol. Reprod. Med. 56 44--61 paperGan, Chepelev, et. al. 2010 Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. Cell Res. 20 763--783 paperVibranovski, Lopes, et. al. 2009, PLoS Genet. 5 e1000731Stage-Specific Expression Profiling of Drosophila Spermatogenesis Suggests that Meiotic Sex Chromosome Inactivation Drives Genomic Relocation of Testis-Expressed Genes. [FBrf0212516][pmid.21093267][doi.10.1016/j.cub.2010.11.013]
Avila and Wolfner 2009 Acp36DE is required for uterine conformational changes in mated Drosophila females. Proc. Natl. Acad. Sci. U.S.A. 106 15796--15800 paperDorus, Freeman, et. al. 2008 Recent origins of sperm genes in Drosophila. Mol. Biol. Evol. 25 2157--2166 paperVardanyan, Atanesyan, et. al. 2008 Dumpy-30 family members as determinants of male fertility and interaction partners of metal-responsive transcription factor 1 (MTF-1) in Drosophila. BMC Dev. Biol. 8 68 paperKonev, Tribus, et. al. 2007 CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo. Science 317 1087--1090 paperBonnefoy, Orsi, et. al. 2007 The essential role of Drosophila HIRA for de novo assembly of paternal chromatin at fertilization. PLoS Genet. 3 e182 paperRathke, Baarends, et. al. 2007 Transition from a nucleosome-based to a protamine-based chromatin configuration during spermiogenesis in Drosophila. J. Cell Sci. 120 1689--1700 paperRaja and Renkawitz-Pohl 2005 Replacement by Drosophila melanogaster protamines and Mst77F of histones during chromatin condensation in late spermatids and role of sesame in the removal of these proteins from the male pronucleus. Mol. Cell. Biol. 25 6165--6177 paperMackay, Heinsohn, et. al. 2005 Genetics and genomics of Drosophila mating behavior. Proc. Natl. Acad. Sci. U.S.A. 102 6622--6629 paperSchmid and Aquadro 2001 The evolutionary analysis of 'orphans' from the Drosophila genome identifies rapidly diverging and incorrectly annotated genes. Genetics 159 589--598 paperReese, Kulp, et. al. 2000 Genie - Gene finding in Drosophila melanogaster. Genome Res. 10 529--538 paperAndrews, Bouffard, et. al. 2000 Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis. Genome Res. 10 2030--2043 paperAshburner, Misra, et. al. 1999 An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster. The Adh region. Genetics 153 179--219 paper
6 55 CG31864 Qtzl Quetzalcoatl   2L *
Rogers and Hartl, 2012, Mol. Biol. Evol. 29(2): 517--529Chimeric Genes as a Source of Rapid Evolution in Drosophila melanogaster. [FBrf0217452]
Zhan et al., 2011, Gene 470(1-2): 1--6Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278]
Rogers et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(24): 10943--10948Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster. [FBrf0211052]
Rogers et al., 2009, Genetics 181(1): 313--322Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster. [FBrf0207085]
Akdemir et al., 2007, Oncogene 26(36): 5184--5193p53 directs focused genomic responses in Drosophila. [FBrf0202061]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 201346 y[1] w[67c23]; P{w[+mC]=GSV3}GS8052/SM1
BDSC 29683 y[1] w[*]; P{w[+mC]=EP}CG18789[G2513] CG18789
6 56 CG33221 CR33221   X Testis
Hogan and Bettencourt, 2009, J. Mol. Evol. 68(4): 337--350Duplicate gene evolution toward multiple fates at the Drosophila melanogaster HIP/HIP-Replacement locus. [FBrf0207702]
Gilfillan et al., 2006, Genes Dev. 20(7): 858--870Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. [FBrf0190543]
Goodliffe et al., 2005, Genes Dev. 19(24): 2941--2946Polycomb mediates Myc autorepression and its transcriptional control of many loci in Drosophila. [FBrf0190544]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
Kyoto DGRC 113820 y[*] w[*] P{GawB}NP6037 / FM7c
Kyoto DGRC 123089 w[1118] P{RS3}CG32789[CB-0244-3] Hip
Kyoto DGRC 204730 y[1] w[67c23] P{w[+mC]=GSV2}GS50028 / C(1)DX, y[1] f[1] Hip
Kyoto DGRC 207010 y[1]w[67c23]P{w[+mC]=GSV2}GS50440/C(1)DX,y[1]f[1]
BDSC 17509 y[1] w[67c23] P{w[+mC] y[+mDint2]=EPgy2}HIP[EY14563] Hip
6 57 CG33240 Ste:CG33240 Ste:CG33240   X *
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
FBrf0208510 - Ste:CG33240[KK115578]
6 58 CG32496 CR32496   X -
Ortiz et al., 2009, Toxicol. Sci. 107(2): 416--426Investigating arsenic susceptibility from a genetic perspective in Drosophila reveals a key role for glutathione synthetase. [FBrf0207145]
Middha and Wang, 2008, BMC Genomics 9: 260Evolution and potential function of fibrinogen-like domains across twelve Drosophila species. [FBrf0205493]
Sambandan et al., 2008, Genetics 179(2): 1079--1088Phenotypic plasticity and genotype by environment interaction for olfactory behavior in Drosophila melanogaster. [FBrf0205545]
Wertheim et al., 2005, Genome Biol. 6(11): R94Genome-wide gene expression in response to parasitoid attack in Drosophila. [FBrf0190809]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
BDSC 21864 w[1118] P{w[+mC]=EPg}HP10272 CG32495
6 59 CG18331 Muc68Ca Mucin 68Ca   3L Salivary gland, Crop, Midgut, Heart, Fat body, Larval Salivary gland, Larval midgut, Larval tubule, Larval hindgut, Larval carcass, S2 cells (growing)
Jensen et al., 2008, Cell Stress Chaperones 13(2): 177--182New candidate genes for heat resistance in Drosophila melanogaster are regulated by HSF. [FBrf0205675]
Syed et al., 2008, PLoS ONE 3(8): e3041A potential role for Drosophila mucins in development and physiology. [FBrf0205867]
Stock Center / ReferenceStock No.Genotype / TransgeneNeighbouring Gene
VDRC v48500 w[1118]; P{GD16190}v48500
VDRC v48501 w[1118]; P{GD16190}v48501/TM3
Exelixis at Harvard Medical School - PBac{WH}CG6084[f00350] CG6084
6 60 CG33243 Ste:CG33243 Ste:CG33243   X *
  • Branch: Branch number in the phylogenetic tree
  • Gene No.: a reference number according to gene order in Supplementary Table 1 in Zhang et al. (2010)
    [http://genome.cshlp.org/content/suppl/2010/08/27/gr.107334.110.DC1/SupplementalTables.xls]
  • Expression: tissue(s) registered as "Up" by Affymetrix Dros2 expression arrays in FlyAtlas
    • "-"; no data
    • " "; no "Up" tissue
    • "*"; Note that some probes are hybridized with multiple genes (transcripts) and that genes (transcripts) may be [are often] represented with multiple probes. In other word, there is no one-to-one correspondence between genes (transcripts) and probes.
  • Neighboring gene: CG number or gene symbol of gene close to the insertion site

Date: 29 March 2013

 

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