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P026 で見つかったSNPs

カラムの上の番号は標準配列(ST)の予想PCR産物での位置を表す。 色を塗った箇所が標準配列と違う塩基を示す。 赤はGATCいずれかに固定しているもの、 ピンクは1塩基に固定していないもの、 灰色はシークエンスがきれいに読めずNだったものを表す。

Strain 56 64 91 112 115 148 160 162 175 187 196 202 211 265 286 295 364 370 391 430 457 460 469 478 505 523 544 550 553 573 580 613 664 679 691 748 769
ST C C T C T A T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S01 C C T C T T T G T T G G T A G A C C A G T T C T C C G G T C G C C A C C T
S02 C C T C T T T G T T G G T A G A C C A G T T C T C C G G T C G C C A C C T
S03 C C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S04 C C T C T N T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S05 C C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S06 Y C T C T A T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S07 C C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S08 C C T C A N T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S09 C C T C T A T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S10   C T C T A T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S11 C C T C T A T A T T G G C G G A C C G G T A C T C C A G T C G C C A C C T
S12 Y C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S13 C C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S14 N C T C T A T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S15 Y C T C T A T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S16 C C T C T Y T R T T G R Y A G A C C A G T W C T C C G G T C G C C A Y M T
S17   C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S18 C C T C T A T A T T G A C A G A T C G G T A T G C C G G T C G C C A T A T
S19 Y C T C T A T A T T G A C A G A T C G G T A T G C C G G T C G C C A T A T
S20   C T C T A T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S21 C C T C T T T G T T G G T A G A C C A G T T C T C C G G T C G C C A C C T
S22 T C T C T A T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S23 C C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S24 Y C T C T A T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S25 C C T C T T T G T T G G T A G A C C A G T T C T C C G G T C G C C A C C T
S26   C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S27   C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S28 Y C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S29   C T C T A T G T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S30 C C T C T T T G T T G G T A G A C C A G T T C T C C G G T C G C C A C C T
S31   C T C T T T G T T G G T A G A C C G G T A C T C C G G T C G C C A C C T
S32 C C T C T A T A T T G G C G G A C C G G T A C T C C G G T C G C C A C C T
S33   G G C C A A G C T G G C A A G C C A G G A C T T C T G A C G T C G C C N
S34 C G G C C A A G C T G G C A G G C C A C T A C T C C T G T T A T C G C C N
S35 C G G T T A A G C A G G C A G G C C A G T A C T T T T G T C G T C G C C N
S36 N G G C C A A G C T G G C A A G C C A G G A C T T C T G A C G T C G C C N
S37   G N C N N A G C T G G C A G G C C A C T A C T C C T G T T A T C G C C N
S38 C G G T T A A G C T A G C A G G C C A G T G C T T C T G T C G T C G C C C
S39   G N T T N A G C T N G C A G A C C A G T G C T T C T G T C G T C G C C C
S40 C G G C T A A G C T G G C G G G C T A G T A C T T C T A T C G C T G C C N

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